Requirements

R-environment

• R (4.2.1)

• RStudio (recent version)

• R packages installed:

  • ‘devtools’

  • ‘shiny’

  • ‘bidsconvertr’

Input data

The input data must have the following structure:

• an input folder containing all folders with DICOM data

• …/subjects/sessions/DICOM

• one folder per subject, for example: “00001”, “00002”

• these folders containing the session data, each of which contains the DICOM data

• …/sessions/subjects/DICOM

• cross-sectional (at least one folder named ‘crosssectional’ or a custom session name)

• one folder per session, for example: “session_1”, “session_2”

• these folders, which contain DICOM data in separate folders for each subject, e.g. “00001”, “00002”

• if you have any additional file structures, please contact me, so that I can include them.